The Department of Military Health Service Organization is the primary department which offers military and professional training and education for students of medicine, pharmacy, military medical management, as well as for paramedical personnel to the extent necessary for the execution of their duties in a wartime health care system. It organizes postgraduate education for military doctors, pharmacists and bachelors in advanced courses and the training of reserve medical officers. It offers specialized training in the field of military health service administration and management.

The subject called "Organization and Tactics of Military Medical Service in Wartime" familiarizes students with the activities of the Medical Service in combat conditions, with the assignments and principals of medical support to troops, the organizational structure of the military health service in combat, the operation of particular medical establishments and the principles of human rights - in particular those defined by the Geneva Convention. The department carries out training in medical support planning, in working with map, triage of casualities, deployment of field medical facilities, calculation of medical casualties and the Military Medical Service management.

Other subjects provide students with knowledge in tactic, logistics, communications, military engineering, topography, and NBC defence. All these subjects are a part of the general military education of Czech Army professionals and are prerequisites of mastering the subject of military medicine.

The department teaches disaster medicine, mainly focused on planning, administration, management and evacuation.

The department serves as a coordinating centre for the field of research work in the discipline of the Military Medical Service Organization and Management. It participates in achieving a better quality of organization in medical units, formations, facilities, operational regulations, and management methods in wartime. It sets out the basic materials and proposals from the above - mentioned areas for the Czech Army Medical Service authorities.